Failure to run make html by sphinx Running sphinx with myst-parser and sphinx-book-theme installed via conda-forge failed. The reason could not be found, but downgrading myst-parser resolved the issue. conda install sphinx-book-theme linki…

Files of calculation on AiiDA Usage — AiiDA 2.0.4.post0 documentation local_copy_list Input files -> local file system -> remote working directory remote_copy_list Files on remote machine -> remote working directory retrieve_list Files on …

Sphinx - MyST - 日本語 - pdf 日本語のドキュメントをsphinxで難なく作れる時代のようです。 Markdownで書きたいので、MySTを使っています。 extensions = [ "sphinx.ext.mathjax", "sphinx.ext.viewcode", "myst_parser", ] myst_enalbe_extensions = [ "a…

AiiDA setup (aiida-core, aiida-vasp, aiida-phonoxpy) on an empty VM from scratch Assuming VASP, phonopy, phono3py, and ALM are installed properly. On ubuntu sudo apt install rabbitmq-server Configure conda-forge with .condarc, channel_prio…

Matplotlib fonts in pdf Fonts in Matplotlib — Matplotlib 3.6.0 documentation plt.rcParams["pdf.use14corefonts"] = True

OpenMP version support by compilers I want to use collapse, but maybe better not to use version 3.0 because of MSVC.... OpenMP Compilers & Tools - OpenMP

_OPENMP not activated with setuptools Environment: M1 mac, conda-forge c-compiler Currently looking for the reason, but _OPENMP is not activated in C macro when using setuptools to compile, though usual build using cmake does with the same…

OpenMP info Welcome to OMP Jupyter Book — OpenMP Application Programming Interface Examples

My recent terminal setting Alacritty env: TERM: xterm-256color selection: save_to_clipboard: true window: dimensions: columns: 90 lines: 24 padding: x: 2 y: 2 font: size: 13 normal: family: 'Iosevka' style: Regular bold: family: 'Iosevka' …

homebrew (macOS Monterey) brew install wget brew install tmux brew install coreutils brew install gnu-tar brew install imagemagick brew install gnuplot brew install ripgrep brew install fd brew install htop brew install --cask macfuse brew…

Terminal alacritty GitHub - alacritty/alacritty: A cross-platform, OpenGL terminal emulator.

Font Iosevka GitHub - be5invis/Iosevka: Versatile typeface for code, from code.

When VSCode "Install in SSH" doesn't work Check proxy settings in .bashrc, .zshrc, etc, and .wgetrc of remote host Close local VSCode Kill all processes of ps ax|grep vscode-server on remote host Start local VSCode connecting remote host

Behaviour different in 3.9.0-15_osxarm64_openblas than previous versions It seems safer the follows: conda install openblas="0.3.18"

No header files in conda package of openBLAS 0.3.20 osx-arm64 I found it's my mistake. I expected conda-forge openblas package is installed automatically by dependency with "libblas==openblas", but only libopenblas was installed. So "openb…

Book title in Revtex bibliography bibtex - Book title in Revtex bibliography - TeX - LaTeX Stack Exchange

VSCode terminal word separators To add "<>" to default "terminal.integrated.wordSeparators": " ()[]{}',\"`─‘’<>"

AiiDA v2.0 migration How to manage your installation — AiiDA 2.0.0 documentation Changelog — AiiDA 2.0.1.post0 documentation Data types — AiiDA 2.0.1.post0 documentation eval "$(_VERDI_COMPLETE=zsh_source verdi)" export AIIDA_WARN_v3=1 % c…

cmake memory check Making CMake work for you if (USE_SANITIZER STREQUAL "Address") set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fsanitize=address") set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fsanitize=address") elseif (USE_SANITIZER STREQUAL "Thread…

Color theme of ipython Write c.InteractiveShell.colors = 'Linux' in ipython.config.py that is created by % ipython profile create for the default profile. Introduction to IPython configuration — IPython 8.1.1 documentation Specific config …

NTP on Ubuntu ... Oh no... (Japanese) UbuntuでNTPが自動起動しない件 - 動かざることバグの如し

Using finufft from python and conda-forge environment GitHub - flatironinstitute/finufft: Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 git clone https://github.com/flatironinstitute/finufft.git Modify make.…

MyST MyST syntax cheat sheet The MyST Syntax Guide MyST Syntax Reference

hiki (on my private server with no security consideration at my own risk) On Ubuntu 20.04 sudo apt install apache2 ruby ruby-hikidoc docdiff ruby-nokogiri ln -s ../mods-available/cgi.load ln -s ../mods-available/cgid.load ln -s ../mods-ava…

conda-forge Autotick Bot GitHub - regro/cf-graph-countyfair: Working files for the @cf-regro-autotick-bot https://github.com/pulls?utf8=%E2%9C%93&q=is%3Aopen+is%3Apr+author%3Aregro-cf-autotick-bot+archived%3Afalse+ Google Summer of Code 20…

M1 Mac environment setup 【M1 Pro/Max対応】M1 Mac環境構築ベストプラクティス - Qiita

Fix Ricty font issue on VScode writing backquote Information in the following like solved pefectly this issue: Ricty系フォントのバックチックを修正する - Koji Noshita Here, the copy of the above information is left considering the case that…

Database upgrade of postgresql from v12 to v13 The postgresql was installed using conda via conda-forge. When running conda upgrade --all, the postgresql was unintentionally updated to v13, and incompatibility of the database happened. The…

Machine Learning for Intelligent Systems CS4780/CS5780 course page | Machine Learning for Intelligent Systems A Visual Exploration of Gaussian Processes A Visual Exploration of Gaussian Processes

VSCode and LaTeX workshop Reference VSCode で最高の LaTeX 環境を作る - Qiita Jump from source to preview: Ctrl+Alt+j (Command+Opt+j) Jump from preview to source : Ctrl+click (Command+click) .latexmkrc "latex-workshop.view.pdf.viewer": "tab…